Structural determinants allowing transferase activity in SENSITIVE TO FREEZING 2, classified as a family I glycosyl hydrolase

J Biol Chem. 2014 Sep 19;289(38):26089-26106. doi: 10.1074/jbc.M114.576694. Epub 2014 Aug 6.

Abstract

SENSITIVE TO FREEZING 2 (SFR2) is classified as a family I glycosyl hydrolase but has recently been shown to have galactosyltransferase activity in Arabidopsis thaliana. Natural occurrences of apparent glycosyl hydrolases acting as transferases are interesting from a biocatalysis standpoint, and knowledge about the interconversion can assist in engineering SFR2 in crop plants to resist freezing. To understand how SFR2 evolved into a transferase, the relationship between its structure and function are investigated by activity assay, molecular modeling, and site-directed mutagenesis. SFR2 has no detectable hydrolase activity, although its catalytic site is highly conserved with that of family 1 glycosyl hydrolases. Three regions disparate from glycosyl hydrolases are identified as required for transferase activity as follows: a loop insertion, the C-terminal peptide, and a hydrophobic patch adjacent to the catalytic site. Rationales for the effects of these regions on the SFR2 mechanism are discussed.

Keywords: Chloroplast; Freezing; Glycosidase; Glycosyl Hydrolase; Glycosyltransferase; Hydrolase; Membrane Turnover; Oligogalactolipid; Stress Response; Transferase.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Arabidopsis / enzymology*
  • Arabidopsis Proteins / chemistry*
  • Arabidopsis Proteins / classification
  • Catalytic Domain
  • Conserved Sequence
  • Hydrogen-Ion Concentration
  • Hydrophobic and Hydrophilic Interactions
  • Intrinsically Disordered Proteins
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Sequence Homology, Amino Acid
  • Structural Homology, Protein
  • beta-Glucosidase / chemistry*
  • beta-Glucosidase / classification

Substances

  • Arabidopsis Proteins
  • Intrinsically Disordered Proteins
  • SFR2 protein, Arabidopsis
  • beta-Glucosidase