Photo-stability of peptide-bond aggregates: N-methylformamide dimers

Phys Chem Chem Phys. 2014 Sep 21;16(35):18877-87. doi: 10.1039/c4cp02518k.

Abstract

The formation of weakly-bound dimers of N-methylformamide (NMF) and the photochemistry of these dimers after irradiation at 248 nm were explored using matrix-isolation spectroscopy. Calculations were used to characterize the diverse isomers and assign their IR spectra; non-adiabatic dynamics was simulated to understand their photo-deactivation mechanism. The most stable dimers, and , were obtained by trans-trans aggregation (N-HO[double bond, length as m-dash]C interactions) and could be identified in the matrix. The main products formed after irradiation are the trans-cis dimers ( and ), also stabilized by N-HO[double bond, length as m-dash]C interactions. In contrast to the photochemistry of the monomers, no dissociative products were observed after 248 nm irradiation of the dimers. The absence of dissociative products can be explained by a proton-transfer mechanism in the excited state that is faster than the photo-dissociative mechanism. The fact that hydrogen bonding has such a significant effect on the photochemical stability of NMF has important implications to understand the stability of peptide-bonded systems to UV irradiation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dimerization
  • Formamides / chemistry*
  • Hydrogen Bonding
  • Isomerism
  • Molecular Conformation
  • Nitrogen / chemistry
  • Peptides / chemistry*
  • Peptides / metabolism
  • Spectrophotometry, Infrared
  • Thermodynamics
  • Ultraviolet Rays

Substances

  • Formamides
  • Peptides
  • Nitrogen
  • methylformamide