Discovery and characterization of pseudocyclic cystine-knot α-amylase inhibitors with high resistance to heat and proteolytic degradation

FEBS J. 2014 Oct;281(19):4351-66. doi: 10.1111/febs.12939. Epub 2014 Aug 8.

Abstract

Obesity and type 2 diabetes are chronic metabolic diseases, and those affected could benefit from the use of α-amylase inhibitors to manage starch intake. The pseudocyclics, wrightides Wr-AI1 to Wr-AI3, isolated from an Apocynaceae plant show promise for further development as orally active α-amylase inhibitors. These linear peptides retain the stability known for cystine-knot peptides in the presence of harsh treatment. They are resistant to heat treatment and endopeptidase and exopeptidase degradation, which is characteristic of cyclic cystine-knot peptides. Our NMR and crystallography analysis also showed that wrightides, which are currently the smallest proteinaceous α-amylase inhibitors reported, contain the backbone-twisting cis-proline, which is preceded by a nonaromatic residue rather than a conventional aromatic residue. The modeled structure and a molecular dynamics study of Wr-AI1 in complex with yellow mealworm α-amylase suggested that, despite having a similar structure and cystine-knot fold, the knottin-type α-amylase inhibitors may bind to insect α-amylase via a different set of interactions. Finally, we showed that the precursors of pseudocyclic cystine-knot α-amylase inhibitors and their biosynthesis in plants follow a secretory protein synthesis pathway. Together, our findings provide insights for the use of the pseudocyclic α-amylase inhibitors as useful leads for the development of orally active peptidyl bioactives, as well as an alternative scaffold for cyclic peptides for engineering metabolically stable human α-amylase inhibitors.

Keywords: cis-proline; cystine knot; pseudocyclics; wrightide; α-amylase inhibitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Apocynaceae / chemistry
  • Crystallography, X-Ray
  • Drug Discovery
  • Enzyme Inhibitors / chemistry*
  • Enzyme Inhibitors / isolation & purification
  • Enzyme Inhibitors / metabolism
  • Hot Temperature
  • Humans
  • Hydrogen Bonding
  • Insect Proteins / antagonists & inhibitors*
  • Insect Proteins / chemistry
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • Molecular Sequence Data
  • Plant Leaves / chemistry
  • Plant Proteins / chemistry*
  • Plant Proteins / isolation & purification
  • Plant Proteins / metabolism
  • Protein Binding
  • Protein Engineering
  • Protein Stability
  • Protein Structure, Tertiary
  • Proteolysis
  • Solutions
  • Tenebrio / enzymology
  • alpha-Amylases / antagonists & inhibitors*
  • alpha-Amylases / chemistry

Substances

  • Enzyme Inhibitors
  • Insect Proteins
  • Plant Proteins
  • Solutions
  • alpha-Amylases

Associated data

  • GENBANK/KF679826
  • GENBANK/KF679827
  • GENBANK/KF679828
  • PDB/2MAU
  • PDB/4BFH