Crystal structure and mechanistic investigation of the twister ribozyme

Nat Chem Biol. 2014 Sep;10(9):739-44. doi: 10.1038/nchembio.1587. Epub 2014 Jul 20.

Abstract

We present a crystal structure at 2.3-Å resolution of the recently described nucleolytic ribozyme twister. The RNA adopts a previously uncharacterized compact fold based on a double-pseudoknot structure, with the active site at its center. Eight highly conserved nucleobases stabilize the core of the ribozyme through the formation of one Watson-Crick and three noncanonical base pairs, and the highly conserved adenine 3' of the scissile phosphate is bound in the major groove of an adjacent pseudoknot. A strongly conserved guanine nucleobase directs its Watson-Crick edge toward the scissile phosphate in the crystal structure, and mechanistic evidence supports a role for this guanine as either a general base or acid in a concerted, general acid-base-catalyzed cleavage reaction.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / chemistry
  • Conserved Sequence
  • Crystallography, X-Ray
  • Models, Molecular
  • Nucleic Acid Conformation
  • Oryza / chemistry
  • RNA / chemistry*
  • RNA, Catalytic / chemistry*
  • RNA, Plant / chemistry

Substances

  • RNA, Catalytic
  • RNA, Plant
  • RNA
  • Adenine