Genetic structure of earthworm populations at a regional scale: inferences from mitochondrial and microsatellite molecular markers in Aporrectodea icterica (Savigny 1826)

PLoS One. 2014 Jul 8;9(7):e101597. doi: 10.1371/journal.pone.0101597. eCollection 2014.

Abstract

Despite the fundamental role that soil invertebrates (e.g. earthworms) play in soil ecosystems, the magnitude of their spatial genetic variation is still largely unknown and only a few studies have investigated the population genetic structure of these organisms. Here, we investigated the genetic structure of seven populations of a common endogeic earthworm (Aporrectodea icterica) sampled in northern France to explore how historical species range changes, microevolutionary processes and human activities interact in shaping genetic variation at a regional scale. Because combining markers with distinct modes of inheritance can provide extra, complementary information on gene flow, we compared the patterns of genetic structure revealed using nuclear (7 microsatellite loci) and mitochondrial markers (COI). Both types of markers indicated low genetic polymorphism compared to other earthworm species, a result that can be attributed to ancient bottlenecks, for instance due to species isolation in southern refugia during the ice ages with subsequent expansion toward northern Europe. Historical events can also be responsible for the existence of two divergent, but randomly interbreeding mitochondrial lineages within all study populations. In addition, the comparison of observed heterozygosity among microsatellite loci and heterozygosity expected under mutation-drift equilibrium suggested a recent decrease in effective size in some populations that could be due to contemporary events such as habitat fragmentation. The absence of relationship between geographic and genetic distances estimated from microsatellite allele frequency data also suggested that dispersal is haphazard and that human activities favour passive dispersal among geographically distant populations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Animals
  • Cluster Analysis
  • DNA, Mitochondrial*
  • France
  • Gene Frequency
  • Genetic Variation
  • Genetics, Population
  • Geography
  • Haplotypes
  • Microsatellite Repeats*
  • Molecular Sequence Data
  • Mutation
  • Oligochaeta / classification
  • Oligochaeta / genetics*
  • Population Dynamics

Substances

  • DNA, Mitochondrial

Associated data

  • GENBANK/KF856627
  • GENBANK/KF856628
  • GENBANK/KF856629
  • GENBANK/KF856630
  • GENBANK/KF856631
  • GENBANK/KF856632
  • GENBANK/KF856633
  • GENBANK/KF856634
  • GENBANK/KF856635
  • GENBANK/KF856636
  • GENBANK/KF856637
  • GENBANK/KF856638
  • GENBANK/KF856639
  • GENBANK/KF856640
  • GENBANK/KF856641
  • GENBANK/KF856642
  • GENBANK/KF856643
  • GENBANK/KF856644
  • GENBANK/KF856645
  • GENBANK/KF856646
  • GENBANK/KF856647
  • GENBANK/KF856648
  • GENBANK/KF856649
  • GENBANK/KF856650
  • GENBANK/KF856651
  • GENBANK/KF856652
  • GENBANK/KF856653
  • GENBANK/KF856654
  • GENBANK/KF856655
  • GENBANK/KF856656
  • GENBANK/KF856657
  • GENBANK/KF856658
  • GENBANK/KF856659
  • GENBANK/KF856660
  • GENBANK/KF856661
  • GENBANK/KF856662
  • GENBANK/KF856663
  • GENBANK/KF856664
  • GENBANK/KF856665
  • GENBANK/KF856666
  • GENBANK/KF856667
  • GENBANK/KF856668
  • GENBANK/KF856669
  • GENBANK/KF856670
  • GENBANK/KF856671
  • GENBANK/KF856672
  • GENBANK/KF856673
  • GENBANK/KF856674
  • GENBANK/KF856675
  • GENBANK/KF856676
  • GENBANK/KF856677
  • GENBANK/KF856678
  • GENBANK/KF856679
  • GENBANK/KF856680
  • GENBANK/KF856681
  • GENBANK/KF856682
  • GENBANK/KF856683
  • GENBANK/KF856684
  • GENBANK/KF856685
  • GENBANK/KF856686
  • GENBANK/KF856687
  • GENBANK/KF856688
  • GENBANK/KF856689
  • GENBANK/KF856690
  • GENBANK/KF856691
  • GENBANK/KF856692
  • GENBANK/KF856693
  • GENBANK/KF856694
  • GENBANK/KF856695
  • GENBANK/KF856696
  • GENBANK/KF856697
  • GENBANK/KF856698
  • GENBANK/KF856699
  • GENBANK/KF856700
  • GENBANK/KF856701
  • GENBANK/KF856702
  • GENBANK/KF856703
  • GENBANK/KF856704
  • GENBANK/KF856705
  • GENBANK/KF856706
  • GENBANK/KF856707
  • GENBANK/KF856708
  • GENBANK/KF856709
  • GENBANK/KF856710

Grants and funding

This work was funded by the French National Research Agency (ANR) as a part of the project EDISP No ANR-08-JCJC-0023. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.