Crystallization and preliminary X-ray crystallographic analysis of a bacterial Asn-transamidosome

Acta Crystallogr F Struct Biol Commun. 2014 Jun;70(Pt 6):790-3. doi: 10.1107/S2053230X14007274. Epub 2014 May 24.

Abstract

Most canonical aminoacyl-tRNAs are synthesized directly by their cognate aminoacyl-tRNA synthetases (aaRSs), but glutaminyl-tRNA(Gln) and asparaginyl-tRNA(Asn) are synthesized indirectly by two-step processes. These processes are catalyzed by the transamidosome, a large ribonucleoprotein particle composed of GatA, GatB, GatC, aaRS and tRNA. In this study, the Asn-transamidosome from Pseudomonas aeruginosa was reconstructed and crystallized by mixing purified GatCAB complex, AspRS and tRNA(Asn). The crystal of the Asn-transamidosome belonged to space group P2₁, with unit-cell parameters a=93.3, b=186.0, c=287.8 Å, β=93.3°, and diffracted to 3.73 Å resolution. Preliminary X-ray crystallographic analysis showed that the asymmetric unit contained two Asn-transamidosomes, each composed of two GatCABs, one AspRS dimer and two tRNAAsns, indicating that the construction of the current Asn-transamidosome differs from that of Thermus thermophilus.

Keywords: Asn-tRNAAsn; AspRS; GatCAB; Pseudomonas aeruginosa; aminoacyl-tRNA; transamidosome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Asparagine / chemistry*
  • Base Sequence
  • Crystallization
  • Crystallography, X-Ray
  • DNA Primers
  • Thermus thermophilus / chemistry*

Substances

  • DNA Primers
  • Asparagine