Next-generation sequencing analysis for detecting human papillomavirus in oral verrucous carcinoma

Oral Surg Oral Med Oral Pathol Oral Radiol. 2014 Jul;118(1):117-125.e1. doi: 10.1016/j.oooo.2014.03.018. Epub 2014 Apr 12.

Abstract

Objective: The etiology of oral verrucous carcinoma is unknown, and human papillomavirus 'involvement' remains contentious. The uncertainty can be attributed to varied detection procedures and difficulties in defining 'gold-standard' histologic criteria for diagnosing 'verrucous' lesions. Their paucity also hampers investigation. We aimed to analyze oral verrucous lesions for human papillomavirus (HPV) subtype genomes.

Study design: We used next-generation sequencing for the detection of papillomavirus sequences, identifying subtypes and computing viral loads. We identified a total of 78 oral verrucous cases (62 carcinomas and 16 hyperplasias). DNA was extracted from all and sequenced at a coverage between 2.5% and 13%.

Results: An HPV-16 sequence was detected in 1 carcinoma and 1 hyperplasia, and an HPV-2 sequence was detected in 1 carcinoma out of the 78 cases, with viral loads of 2.24, 8.16, and 0.33 viral genomes per cell, respectively.

Conclusions: Our results indicate no conclusive human papillomavirus involvement in oral verrucous carcinoma or hyperplasia.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Carcinoma, Verrucous / genetics
  • Carcinoma, Verrucous / virology*
  • Female
  • Herpesviridae Infections / genetics
  • Herpesviridae Infections / virology
  • Human papillomavirus 16 / genetics
  • Human papillomavirus 16 / isolation & purification
  • Humans
  • Male
  • Middle Aged
  • Mouth Neoplasms / genetics
  • Mouth Neoplasms / virology*
  • Papillomaviridae / genetics
  • Papillomaviridae / isolation & purification*
  • Papillomavirus Infections / genetics
  • Papillomavirus Infections / virology*
  • Sequence Analysis, DNA / methods*
  • Viral Load