Affinity-based SDS PAGE identification of phosphorylated Arabidopsis MAPKs and substrates by acrylamide pendant Phos-Tag™

Methods Mol Biol. 2014:1171:47-63. doi: 10.1007/978-1-4939-0922-3_5.

Abstract

Protein phosphorylation is the most abundant and best studied protein posttranslational modification, dedicated to the regulation of protein function and subcellular localization as well as to protein-protein interactions. Identification and quantitation of the dynamic, conditional protein phosphorylation can be achieved by either metabolic labeling of the protein of interest with (32)P-labeled ATP followed by autoradiographic analysis, the use of specific monoclonal or polyclonal antibodies against the phosphorylated protein species and finally by phosphoproteome delineation using mass spectrometry.Hereby we present a fourth alternative which relies on the enforced-affinity-based-electrophoretic separation of phosphorylated from non-phosphorylated protein species by standard SDS-PAGE systems co-polymerized with Phos-Tag™ and Mn(2+) or Zn(2+) cations. Phosphate groups of phosphorylated Ser, Thr, and Tyr residues form complexes with Mn(2+) and Zn(2+) cations with polyacrylamide immobilized Phos-Tag™. Following appropriate treatment of the gels, separated proteins can be quantitatively transferred to PVDF or nitrocellulose membranes and probed with common-not phosphorylation state specific-antibodies and delineate the occurrence of a certain phosphoprotein species against its non-phosphorylated counterpart.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acrylamide / chemistry*
  • Arabidopsis / enzymology*
  • Arabidopsis / growth & development
  • Bacteriophage lambda / enzymology
  • Culture Techniques
  • Electrophoresis, Polyacrylamide Gel / methods*
  • Membranes, Artificial
  • Mitogen-Activated Protein Kinases / isolation & purification*
  • Mitogen-Activated Protein Kinases / metabolism*
  • Phenol / chemistry
  • Phosphoproteins / isolation & purification*
  • Phosphoproteins / metabolism*
  • Phosphoric Monoester Hydrolases / metabolism
  • Phosphorylation
  • Polyvinyls / chemistry

Substances

  • Membranes, Artificial
  • Phosphoproteins
  • Polyvinyls
  • Acrylamide
  • polyvinylidene fluoride
  • Phenol
  • Mitogen-Activated Protein Kinases
  • Phosphoric Monoester Hydrolases