Systems metabolic engineering of Escherichia coli for gram scale production of the antitumor drug deoxyviolacein from glycerol

Biotechnol Bioeng. 2014 Nov;111(11):2280-9. doi: 10.1002/bit.25297. Epub 2014 Aug 25.

Abstract

Deoxyviolacein is a microbial drug with biological activity against tumors, gram-positive bacteria, and fungal plant pathogens. Here, we describe an Escherichia coli strain for heterologous production of this high-value drug from glycerol. Plasmid-based expression of the deoxyviolacein cluster vioABCE was controlled by the araBAD promoter and induction by L-arabinose. Through elimination of L-arabinose catabolism in E. coli, the pentose sugar could be fully directed to induction of deoxyviolacein biosynthesis and was no longer metabolized, as verified by (13) C isotope experiments. Deletion of the araBAD genes beneficially complemented with previously described (i) engineering of the pentose phosphate pathway, (ii) chorismate biosynthesis, (iii) tryptophan biosynthesis, (iv) improved supply of L-serine, (v) elimination of tryptophan repression, and (vi) of tryptophan catabolism. Subsequent screening of the created next-generation producer E. coli dVio-8 identified glycerol as optimum carbon source and a level of 100 mg L(-1) of L-arabinose as optimum for induction. Transferred to a glycerol-based fed-batch process, E. coli dVio-8 surpassed the gram scale and produced 1.6 g L(-1) deoxyviolacein. With straightforward extraction from culture broth and purification by flash chromatography, deoxyviolacein was obtained at >99.5% purity. Biotechnol. Bioeng. 2014;111: 2280-2289. © 2014 Wiley Periodicals, Inc.

Keywords: 13C flux; L-arabinose; deoxyviolacein; glycerol; natural product; tryptophan.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antineoplastic Agents / metabolism*
  • Arabinose / metabolism
  • Cloning, Molecular
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism*
  • Gene Deletion
  • Gene Expression Regulation, Bacterial / drug effects
  • Glycerol / metabolism*
  • Indoles / metabolism*
  • Metabolic Engineering / methods*
  • Metabolic Networks and Pathways / genetics*
  • Multigene Family
  • Plasmids
  • Promoter Regions, Genetic

Substances

  • Antineoplastic Agents
  • Indoles
  • Arabinose
  • Glycerol
  • violacein