Ochrovirga pacifica gen. nov., sp. nov., a novel agar-lytic marine bacterium of the family Flavobacteriaceae isolated from a seaweed

Curr Microbiol. 2014 Oct;69(4):445-50. doi: 10.1007/s00284-014-0598-4. Epub 2014 May 20.

Abstract

A strain designated as S85(T) was isolated from a seaweed collected from coastal area of Chuuk State in Micronesia. The strain was gram-negative, rod-shaped, and non-motile and formed yellow colonies on the SWY agar (0.2 % yeast extract and 1.5 % agar in seawater) and Marine agar 2216. The strain grew at pH 5-9 (optimum, pH 8), at 15-40 °C (optimum, 25-28 °C), and with 1-9 % (w/v) NaCl (optimum, 3 %). The phylogenetic analysis based on 16S rRNA gene sequence showed that strain S85(T) was related to Lutibacter litoralis CL-TF09(T) and Maritimimonas rapanae A31(T) with 91.4 % and with 90.5 % similarity, respectively. The dominant fatty acids were iso-C15:0, iso-C15:0 3-OH and iso-C17:0 3-OH, C16:0 3-OH and summed feature 3 (C16:1 ω7c and/or iso-C15:0 2-OH). The major isoprenoid quinone was MK-6. The DNA G+C content of the type strain was 34.6 mol %. The major polar lipids were phosphatidylethanolamine, an unknown glycolipid and two unknown polar lipids. Based on this polyphasic taxonomic data, strain S85(T) stands for a novel species of a new genus, and we propose the name Ochrovirga pacifica gen. nov., sp. nov. The type strain of O. pacifica is S85(T) (=KCCM 90106 =JCM 18327(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agar / metabolism
  • Base Composition
  • Fatty Acids / metabolism
  • Flavobacteriaceae / classification
  • Flavobacteriaceae / genetics
  • Flavobacteriaceae / immunology
  • Flavobacteriaceae / isolation & purification*
  • Flavobacteriaceae / metabolism
  • Micronesia
  • Molecular Sequence Data
  • Phylogeny
  • Seawater / microbiology*
  • Seaweed / microbiology*

Substances

  • Fatty Acids
  • Agar

Associated data

  • GENBANK/JN596241