RNAbrowse: RNA-Seq de novo assembly results browser

PLoS One. 2014 May 13;9(5):e96821. doi: 10.1371/journal.pone.0096821. eCollection 2014.

Abstract

Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.

MeSH terms

  • Computational Biology / methods
  • Gene Expression Profiling*
  • Humans
  • Internet*
  • Sequence Analysis, RNA / methods*
  • Software*
  • User-Computer Interface*

Grants and funding

The authors have no support or funding to report.