Staufen1-mediated mRNA decay induces Requiem mRNA decay through binding of Staufen1 to the Requiem 3'UTR

Nucleic Acids Res. 2014 Jun;42(11):6999-7011. doi: 10.1093/nar/gku388. Epub 2014 May 5.

Abstract

Requiem (REQ/DPF2) was originally identified as an apoptosis-inducing protein in mouse myeloid cells and belongs to the novel Krüppel-type zinc finger d4-protein family of proteins, which includes neuro-d4 (DPF1) and cer-d4 (DPF3). Interestingly, when a portion of the REQ messenger ribonucleic acid (mRNA) 3' untranslated region (3'UTR), referred to as G8, was overexpressed in K562 cells, β-globin expression was induced, suggesting that the 3'UTR of REQ mRNA plays a physiological role. Here, we present evidence that the REQ mRNA 3'UTR, along with its trans-acting factor, Staufen1 (STAU1), is able to reduce the level of REQ mRNA via STAU1-mediated mRNA decay (SMD). By screening a complementary deoxyribonucleic acid (cDNA) expression library with an RNA-ligand binding assay, we identified STAU1 as an interactor of the REQ mRNA 3'UTR. Specifically, we provide evidence that STAU1 binds to putative 30-nucleotide stem-loop-structured RNA sequences within the G8 region, which we term the protein binding site core; this binding triggers the degradation of REQ mRNA and thus regulates translation. Furthermore, we demonstrate that siRNA-mediated silencing of either STAU1 or UPF1 increases the abundance of cellular REQ mRNA and, consequently, the REQ protein, indicating that REQ mRNA is a target of SMD.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions*
  • Animals
  • Binding Sites
  • Cell Line
  • Cytoskeletal Proteins / metabolism*
  • DNA-Binding Proteins / genetics*
  • HeLa Cells
  • Humans
  • K562 Cells
  • Mice
  • Nucleic Acid Conformation
  • RNA Stability*
  • RNA, Messenger / metabolism*
  • RNA-Binding Proteins / metabolism*
  • Transcription Factors

Substances

  • 3' Untranslated Regions
  • Cytoskeletal Proteins
  • DNA-Binding Proteins
  • DPF2 protein, human
  • RNA, Messenger
  • RNA-Binding Proteins
  • STAU1 protein, human
  • Transcription Factors