Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii

Int J Biol Macromol. 2014 Jul:68:151-7. doi: 10.1016/j.ijbiomac.2014.04.048. Epub 2014 Apr 30.

Abstract

The thermostable d-lactate dehydrogenase from Lactobacillus jensenii (Ljd-LDH) is a key enzyme in the production of the d-form of lactic acid from pyruvate concomitant with the oxidation of NADH to NAD(+). The polymers of d-lactic acid are used as biodegradable bioplastics. The crystal structures of Ljd-LDH and in complex with NAD(+) were determined at 2.13 and 2.60Å resolutions, respectively. The Ljd-LDH monomer consists of the N-terminal substrate-binding domain and the C-terminal NAD-binding domain. The Ljd-LDH forms a homodimeric structure, and the C-terminal NAD-binding domain mostly enables the dimerization of the enzyme. The NAD cofactor is bound to the GxGxxG NAD-binding motif located between the two domains. Structural comparisons of Ljd-LDH with other d-LDHs reveal that Ljd-LDH has unique amino acid residues at the linker region, which indicates that the open-close dynamics of Ljd-LDH might be different from that of other d-LDHs. Moreover, thermostability experiments showed that the T50(10) value of Ljd-LDH (54.5°C) was much higher than the commercially available d-lactate dehydrogenase (42.7°C). In addition, Ljd-LDH has at least a 7°C higher denaturation temperature compared to commercially available d-LDHs.

Keywords: Lactobacillus jensenii; Polylactic acid; d-Lactate dehydrogenase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Catalytic Domain
  • Crystallography, X-Ray
  • Enzyme Stability
  • Kinetics
  • Lactate Dehydrogenases / chemistry*
  • Lactate Dehydrogenases / metabolism*
  • Lactobacillus / enzymology*
  • Models, Molecular
  • Molecular Sequence Data
  • NAD / metabolism
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / chemistry
  • Thermodynamics

Substances

  • Recombinant Proteins
  • NAD
  • Lactate Dehydrogenases
  • D-lactate dehydrogenase