Genetic signatures for enhanced olfaction in the African mole-rats

PLoS One. 2014 Apr 3;9(4):e93336. doi: 10.1371/journal.pone.0093336. eCollection 2014.

Abstract

The Olfactory Receptor (OR) superfamily, the largest in the vertebrate genome, is responsible for vertebrate olfaction and is traditionally subdivided into 17 OR families. Recent studies characterising whole-OR subgenomes revealed a 'birth and death' model of evolution for a range of species, however little is known about fine-scale evolutionary dynamics within single-OR families. This study reports the first assessment of fine-scale OR evolution and variation in African mole-rats (Bathyergidae), a family of subterranean rodents endemic to sub-Saharan Africa. Because of the selective pressures of life underground, enhanced olfaction is proposed to be fundamental to the evolutionary success of the Bathyergidae, resulting in a highly diversified OR gene-repertoire. Using a PCR-sequencing approach, we analysed variation in the OR7 family across 14 extant bathyergid species, which revealed enhanced levels of functional polymorphisms concentrated across the receptors' ligand-binding region. We propose that mole-rats are able to recognise a broad range of odorants and that this diversity is reflected throughout their OR7 gene repertoire. Using both classic tests and tree-based methods to test for signals of selection, we investigate evolutionary forces across the mole-rat OR7 gene tree. Four well-supported clades emerged in the OR phylogeny, with varying signals of selection; from neutrality to positive and purifying selection. Bathyergid life-history traits and environmental niche-specialisation are explored as possible drivers of adaptive OR evolution, emerging as non-exclusive contributors to the positive selection observed at OR7 genes. Our results reveal unexpected complexity of evolutionary mechanisms acting within a single OR family, providing insightful perspectives into OR evolutionary dynamics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Biological Evolution
  • Environment
  • Genetic Variation / genetics
  • Mole Rats / genetics*
  • Molecular Sequence Data
  • Phylogeny
  • Receptors, Odorant / genetics*
  • Smell / genetics*
  • Species Specificity

Substances

  • Receptors, Odorant

Associated data

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Grants and funding

This study was supported by the University of Cape Town Research Committee and the South African National Research Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.