A coupled watershed-reservoir modeling approach consisting of a watershed distributed model (SWAT) and a two-dimensional laterally averaged model (CE-QUAL-W2) was adopted for simulating the impact of non-point source pollution from upland watershed on water quality of Shanmei Reservoir. Using the daily serial output from Shanmei Reservoir watershed by SWAT as the input to Shanmei Reservoir by CE-QUAL-W2, the coupled modeling was calibrated for runoff and outputs of sediment and pollutant at watershed scale and for elevation, temperature, nitrate, ammonium and total nitrogen in Shanmei Reservoir. The results indicated that the simulated values agreed fairly well with the observed data, although the calculation precision of downstream model would be affected by the accumulative errors generated from the simulation of upland model. The SWAT and CE-QUAL-W2 coupled modeling could be used to assess the hydrodynamic and water quality process in complex watershed comprised of upland watershed and downstream reservoir, and might further provide scientific basis for positioning key pollution source area and controlling the reservoir eutrophication.