Molecular diagnosis of central nervous system opportunistic infections in HIV-infected Zambian adults

Clin Infect Dis. 2014 Jun;58(12):1771-7. doi: 10.1093/cid/ciu191. Epub 2014 Mar 25.

Abstract

Background: Knowledge of central nervous system (CNS) opportunistic infections (OIs) among people living with human immunodeficiency virus (HIV) in sub-Saharan Africa is limited.

Methods: We analyzed 1 cerebrospinal fluid (CSF) sample from each of 331 HIV-infected adults with symptoms suggestive of CNS OI at a tertiary care center in Zambia. We used pathogen-specific primers to detect DNA from JC virus (JCV), varicella zoster virus (VZV), cytomegalovirus (CMV), Epstein-Barr virus (EBV), herpes simplex virus (HSV) types 1 and 2, Mycobacterium tuberculosis, and Toxoplasma gondii via real-time polymerase chain reaction (PCR).

Results: The patients' median CD4(+) T-cell count was 89 cells/µL (interquartile range, 38-191 cells/µL). Of 331 CSF samples, 189 (57.1%) had at least 1 pathogen. PCR detected DNA from EBV in 91 (27.5%) patients, M. tuberculosis in 48 (14.5%), JCV in 20 (6.0%), CMV in 20 (6.0%), VZV in 13 (3.9%), HSV-1 in 5 (1.5%), and HSV-2 and T. gondii in none. Fungal and bacteriological studies showed Cryptococcus in 64 (19.5%) patients, pneumococcus in 8 (2.4%), and meningococcus in 2 (0.6%). Multiple pathogens were found in 68 of 189 (36.0%) samples. One hundred seventeen of 331 (35.3%) inpatients died during their hospitalization. Men were older than women (median, 37 vs 34 years; P = .01), more recently diagnosed with HIV (median, 30 vs 63 days; P = .03), and tended to have a higher mortality rate (40.2% vs 30.2%; P = .07).

Conclusions: CNS OIs are frequent, potentially treatable complications of AIDS in Zambia. Multiple pathogens often coexist in CSF. EBV is the most prevalent CNS organism in isolation and in coinfection. Whether it is associated with CNS disease or a marker of inflammation requires further investigation. More comprehensive testing for CNS pathogens could improve treatment and patient outcomes in Zambia.

Keywords: HIV; PCR; Zambia; cerebrospinal fluid; opportunistic infections.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • AIDS-Related Opportunistic Infections / cerebrospinal fluid
  • AIDS-Related Opportunistic Infections / diagnosis*
  • AIDS-Related Opportunistic Infections / mortality
  • Adult
  • Bacterial Infections / cerebrospinal fluid
  • Bacterial Infections / diagnosis*
  • Bacterial Infections / mortality
  • CD4 Lymphocyte Count
  • Central Nervous System Infections / cerebrospinal fluid
  • Central Nervous System Infections / diagnosis*
  • Central Nervous System Infections / mortality
  • Cross-Sectional Studies
  • Cryptococcosis / cerebrospinal fluid
  • Cryptococcosis / diagnosis
  • Cryptococcosis / mortality
  • Cryptococcus / genetics
  • DNA / cerebrospinal fluid*
  • DNA, Bacterial / cerebrospinal fluid
  • DNA, Fungal / cerebrospinal fluid
  • DNA, Protozoan / cerebrospinal fluid
  • DNA, Viral / cerebrospinal fluid
  • Female
  • Herpesviridae / genetics*
  • Humans
  • JC Virus / genetics
  • Male
  • Molecular Diagnostic Techniques
  • Mycobacterium tuberculosis / genetics
  • Neisseria meningitidis / genetics
  • Seizures / microbiology
  • Seizures / parasitology
  • Streptococcus pneumoniae / genetics
  • Toxoplasma / genetics
  • Toxoplasmosis / cerebrospinal fluid
  • Toxoplasmosis / diagnosis
  • Virus Diseases / cerebrospinal fluid
  • Virus Diseases / diagnosis*
  • Virus Diseases / mortality
  • Zambia

Substances

  • DNA, Bacterial
  • DNA, Fungal
  • DNA, Protozoan
  • DNA, Viral
  • DNA