Anti-cooperative ligand binding and dimerisation in the glycopeptide antibiotic dalbavancin

Org Biomol Chem. 2014 Apr 28;12(16):2568-75. doi: 10.1039/c3ob42428f.

Abstract

Dalbavancin, a semi-synthetic glycopeptide with enhanced antibiotic activity compared to vancomycin and teicoplanin, binds to the C-terminal lysyl-d-alanyl-d-alanine subunit of Lipid II, inhibiting peptidoglycan biosynthesis. In this study, micro-calorimetry and electrospray ionization (ESI)-MS have been used to investigate the relationship between oligomerisation of dalbavancin and binding of a Lipid II peptide mimic, diacetyl-Lys-d-Ala-d-Ala (Ac2-Kaa). Dalbavancin dimerised strongly in an anti-cooperative manner with ligand-binding, as was the case for ristocetin A, but not for vancomycin and teicoplanin. Dalbavancin and ristocetin A both adopt an 'closed' conformation upon ligand binding, suggesting anti-cooperative dimerisation with ligand-binding may be a general feature of dalbavancin/ristocetin A-like glycopeptides. Understanding these effects may provide insight into design of novel dalbavancin derivatives with cooperative ligand-binding and dimerisation characteristics that could enhance antibiotic activity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemical synthesis
  • Anti-Bacterial Agents / chemistry*
  • Binding Sites
  • Calorimetry
  • Dimerization
  • Glycopeptides / chemistry*
  • Ligands
  • Models, Molecular
  • Molecular Conformation
  • Ristocetin / chemistry
  • Solutions
  • Spectrometry, Mass, Electrospray Ionization
  • Teicoplanin / analogs & derivatives*
  • Teicoplanin / chemical synthesis
  • Teicoplanin / chemistry

Substances

  • Anti-Bacterial Agents
  • Glycopeptides
  • Ligands
  • Solutions
  • Ristocetin
  • ristocetin A
  • Teicoplanin
  • dalbavancin