To find out how microalgae cope with heat stress, the small vegetative cells of a synchronous Scenedesmus vacuolatus culture were subjected to heat treatment and then cultured under continuous illumination. The heat-treated cells were found first to enter a degenerative intermediate stage with low cellular activities almost right after the start of the cultivation, which was then followed by a revival. The changes in physiological activities and morphology of the treated cells throughout the whole period of regeneration were explored. The variations in cellular DNA content and protein composition were also investigated. Stressed cells at the end of the degeneration stage were completely bleached and were also characterized by condensed but undegraded chromatin, partially disintegrated chloroplasts but with the thylakoid membrane system retained, partially operating mitochondria, intact plasma membranes, and a dramatically changed profile of cellular proteins. All of our data indicate they were still alive but in a different physiological state than the control cells. Recovery started with regeneration of mitochondrial cristae and redispersion of chromatins. These were followed by regreening and resuscitation of chloroplasts, which often started from one part of a thylakoid membrane system and then spread out. This study provided a unicellular model for studying how plant cells react to a period of stress and recover.