Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):676-84. doi: 10.1107/S1399004713032264. Epub 2014 Feb 15.

Abstract

The four-domain structure of chitinase 60 from Moritella marina (MmChi60) is outstanding in its complexity. Many glycoside hydrolases, such as chitinases and cellulases, have multi-domain structures, but only a few have been solved. The flexibility of the hinge regions between the domains apparently makes these proteins difficult to crystallize. The analysis of an active-site mutant of MmChi60 in an unliganded form and in complex with the substrates NAG4 and NAG5 revealed significant differences in the substrate-binding site compared with the previously determined complexes of most studied chitinases. A SAXS experiment demonstrated that in addition to the elongated state found in the crystal, the protein can adapt other conformations in solution ranging from fully extended to compact.

Keywords: Ig-like domain; SAXS; TIM β/α-barrel; chitin; chitin-binding domain; chitinase; flexibility; hinge regions; ligand binding; multi-domain; psychrophilic.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chitinases / chemistry*
  • Chitinases / genetics
  • Chitinases / metabolism*
  • Crystallography, X-Ray
  • Ligands
  • Moritella / enzymology*
  • Moritella / genetics
  • Oligosaccharides / chemistry
  • Oligosaccharides / metabolism
  • Point Mutation
  • Protein Conformation
  • Protein Multimerization
  • Scattering, Small Angle
  • Solutions
  • Substrate Specificity
  • X-Ray Diffraction

Substances

  • Ligands
  • Oligosaccharides
  • Solutions
  • chitotetrose
  • Chitinases

Associated data

  • PDB/4HMC
  • PDB/4MB3
  • PDB/4MB4
  • PDB/4MB5