Complete genome sequence and organization of a novel virus from the rice false smut fungus Ustilaginoidea virens

Virus Genes. 2014 Apr;48(2):329-33. doi: 10.1007/s11262-013-1022-z. Epub 2014 Feb 9.

Abstract

In this study, three dsRNA segments from the rice false smut fungus Ustilaginoidea virens, the causal agent of a serious disease in rice, with molecular size ranging from 1.3 to 5 Kb, were isolated and named as dsRNA-L, dsRNA-M, and dsRNA-S. The complete nucleotide sequences of dsRNA-M and dsRNA-S were determined and analyzed. The dsRNA-M putatively encodes an RNA-dependent RNA polymerase, which is similar to that of the partitiviruses in the family Partitiviridae. Although the protein encoded by dsRNA-S showed less similarity to the typical coat protein of the virus in the family Partitiviridae, the structural analysis results indicated that the dsRNA-S might function as the capsid protein. We propose that the virus is Ustilaginoidea virens partitivirus 2-Uv0901, a new member, but distantly related to the newly proposed genus Gammapartitivirus with a distinct sequence pattern of capsid protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Genome, Fungal*
  • Molecular Sequence Data
  • Oryza / microbiology*
  • Sequence Homology, Amino Acid
  • Ustilaginales / genetics*
  • Ustilaginales / virology