Molecular characterization, transcriptional regulation and association analysis with carcass traits of porcine TCAP gene

Gene. 2014 Apr 1;538(2):273-9. doi: 10.1016/j.gene.2014.01.043. Epub 2014 Jan 23.

Abstract

TCAP (also known as titin-cap or telethonin) is one of the titin interacting Z-disk proteins involved in the regulation and development of normal sarcomeric structure. In this study, we cloned the cDNA and promoter sequences of porcine TCAP gene, which contained a 504 bp full-length coding region. Quantitative real-time PCR (qRT-PCR) analyses showed that porcine TCAP was highly expressed in the skeletal muscle, heart, and kidney. During postnatal muscle development, TCAP expression was down-regulated from 30 days to 120 days in Large White and Meishan pigs. One single nucleotide polymorphism c.334 G>A in exon 2 of the TCAP gene was identified and detected by allele-specific primer-polymerase chain reaction (ASP-PCR). Association analysis revealed that the polymorphism had significant associations (P<0.05 and P<0.01) with some carcass traits. Analysis of the porcine TCAP promoter in different cell lines demonstrated that it is a muscle-specific promoter. In addition, we found that the porcine TCAP promoter can be activated by MyoD, MyoG and MEF2 in myotubes, which indicated that TCAP may play a role in the regulation of porcine skeletal muscle development. These findings provide useful information for the further investigation of the function of TCAP in porcine skeletal muscle.

Keywords: Pig; Promoter; SNP; TCAP; Transcriptional analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Line
  • Cloning, Molecular
  • DNA / genetics
  • Female
  • Gene Expression Regulation, Developmental
  • MEF2 Transcription Factors / metabolism
  • Male
  • Molecular Sequence Data
  • Muscle Development / genetics
  • Muscle Development / physiology
  • Muscle Fibers, Skeletal / metabolism
  • Muscle Proteins / genetics*
  • Muscle Proteins / metabolism
  • Muscle, Skeletal / growth & development
  • Muscle, Skeletal / metabolism
  • MyoD Protein / metabolism
  • Myogenin / metabolism
  • Polymorphism, Single Nucleotide
  • Promoter Regions, Genetic
  • Sarcomeres / genetics
  • Sarcomeres / metabolism
  • Sus scrofa / genetics*
  • Sus scrofa / growth & development*
  • Sus scrofa / physiology

Substances

  • MEF2 Transcription Factors
  • Muscle Proteins
  • MyoD Protein
  • Myogenin
  • DNA