Structural integrity of the PCI domain of eIF3a/TIF32 is required for mRNA recruitment to the 43S pre-initiation complexes

Nucleic Acids Res. 2014 Apr;42(6):4123-39. doi: 10.1093/nar/gkt1369. Epub 2014 Jan 13.

Abstract

Transfer of genetic information from genes into proteins is mediated by messenger RNA (mRNA) that must be first recruited to ribosomal pre-initiation complexes (PICs) by a mechanism that is still poorly understood. Recent studies showed that besides eIF4F and poly(A)-binding protein, eIF3 also plays a critical role in this process, yet the molecular mechanism of its action is unknown. We showed previously that the PCI domain of the eIF3c/NIP1 subunit of yeast eIF3 is involved in RNA binding. To assess the role of the second PCI domain of eIF3 present in eIF3a/TIF32, we performed its mutational analysis and identified a 10-Ala-substitution (Box37) that severely reduces amounts of model mRNA in the 43-48S PICs in vivo as the major, if not the only, detectable defect. Crystal structure analysis of the a/TIF32-PCI domain at 2.65-Å resolution showed that it is required for integrity of the eIF3 core and, similarly to the c/NIP1-PCI, is capable of RNA binding. The putative RNA-binding surface defined by positively charged areas contains two Box37 residues, R363 and K364. Their substitutions with alanines severely impair the mRNA recruitment step in vivo suggesting that a/TIF32-PCI represents one of the key domains ensuring stable and efficient mRNA delivery to the PICs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / genetics
  • Amino Acid Substitution
  • Basic-Leucine Zipper Transcription Factors / genetics
  • Eukaryotic Initiation Factor-3 / chemistry*
  • Eukaryotic Initiation Factor-3 / genetics
  • Eukaryotic Initiation Factor-3 / metabolism
  • Models, Molecular
  • Mutation
  • Peptide Chain Initiation, Translational*
  • Phenotype
  • Protein Structure, Tertiary
  • RNA, Messenger / metabolism*
  • Ribosome Subunits, Small, Eukaryotic / metabolism
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Basic-Leucine Zipper Transcription Factors
  • Eukaryotic Initiation Factor-3
  • GCN4 protein, S cerevisiae
  • NIP1 protein, S cerevisiae
  • RNA, Messenger
  • RPG1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Alanine

Associated data

  • PDB/4K51