The complete mitochondrial genome of the Hwanghae Rockfish Sebastes koreanus (Scorpaenidae, Scorpaeniformes)

Mitochondrial DNA. 2015;26(6):834-5. doi: 10.3109/19401736.2013.855916. Epub 2014 Jan 10.

Abstract

The complete mitochondrial genome sequence of Sebastes koreanus was determined by next-generation sequencing. The total genome was 16,499 bp in length, comprising two rRNA, 22 tRNA and 13 protein-coding genes (PCGs), as well as the mtDNA control region. The genome constitutes 27.9% A, 26.6% T, 17.1% G and 28.4% C, showing a slight AT bias (54.5%). Of the 13 mitochondrial PCGs, 12 have an ATG start codon while COX1 had a GTG start codon; the incomplete stop codon (T) was present in the ND3, ND4 and Cytb genes. The anti-G bias was considerably lower at the third codon position of PCGs (8.8%). The complete mitogenome sequence of S. koreanus will contribute to molecular phylogenetic and evolutionary analyses of Sebastinae and to the identification of its genetic populations in the Yellow Sea.

Keywords: Hwanghae rockfish; Sebastes koreanus; Sebastinae; mitochondrial genome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • DNA, Mitochondrial / analysis
  • DNA, Mitochondrial / genetics
  • Fishes, Poisonous / classification
  • Fishes, Poisonous / genetics*
  • Genome, Mitochondrial*
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • RNA, Ribosomal / genetics
  • RNA, Transfer / genetics
  • Republic of Korea
  • Sequence Analysis, DNA

Substances

  • DNA, Mitochondrial
  • RNA, Ribosomal
  • RNA, Transfer

Associated data

  • GENBANK/KF561237