DNA barcoding and species boundary delimitation of selected species of Chinese Acridoidea (Orthoptera: Caelifera)

PLoS One. 2013 Dec 20;8(12):e82400. doi: 10.1371/journal.pone.0082400. eCollection 2013.

Abstract

We tested the performance of DNA barcoding in Acridoidea and attempted to solve species boundary delimitation problems in selected groups using COI barcodes. Three analysis methods were applied to reconstruct the phylogeny. K2P distances were used to assess the overlap range between intraspecific variation and interspecific divergence. "Best match (BM)", "best close match (BCM)", "all species barcodes (ASB)" and "back-propagation neural networks (BP-based method)" were utilized to test the success rate of species identification. Phylogenetic species concept and network analysis were employed to delimitate the species boundary in eight selected species groups. The results demonstrated that the COI barcode region performed better in phylogenetic reconstruction at genus and species levels than at higher-levels, but showed a little improvement in resolving the higher-level relationships when the third base data or both first and third base data were excluded. Most overlaps and incorrect identifications may be due to imperfect taxonomy, indicating the critical role of taxonomic revision in DNA barcoding study. Species boundary delimitation confirmed the presence of oversplitting in six species groups and suggested that each group should be treated as a single species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Bayes Theorem
  • China
  • DNA Barcoding, Taxonomic*
  • DNA, Mitochondrial / genetics
  • Electron Transport Complex IV / genetics
  • Genetic Variation
  • Haplotypes / genetics
  • Molecular Sequence Data
  • Orthoptera / classification*
  • Phylogeny*
  • Sequence Alignment
  • Species Specificity

Substances

  • DNA, Mitochondrial
  • Electron Transport Complex IV

Associated data

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Grants and funding

This study is supported by National Natural Science Foundation of China (No. 30970346, 31172076, 31260523), the Fundamental Research Funds for the Central Universities (GK201001004), China Postdoctoral Science Foundation (20070421105) and Guangxi Natural Science Foundation (2010GXNSFA013070). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.