Economical and accurate protocol for calculating hydrogen-bond-acceptor strengths

J Chem Inf Model. 2013 Dec 23;53(12):3262-72. doi: 10.1021/ci4006222. Epub 2013 Dec 11.

Abstract

A series of density functional/basis set combinations and second-order Møller-Plesset calculations have been used to test their ability to reproduce the trends observed experimentally for the strengths of hydrogen-bond acceptors in order to identify computationally efficient techniques for routine use in the computational drug-design process. The effects of functionals, basis sets, counterpoise corrections, and constraints on the optimized geometries were tested and analyzed, and recommendations (M06-2X/cc-pVDZ and X3LYP/cc-pVDZ with single-point counterpoise corrections or X3LYP/aug-cc-pVDZ without counterpoise) were made for suitable moderately high-throughput techniques.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Drug Design
  • High-Throughput Screening Assays / economics
  • Humans
  • Hydrogen Bonding
  • Ligands
  • Methanol / chemistry*
  • Models, Chemical*
  • Phenols / chemistry
  • Proteins / chemistry
  • Quantum Theory
  • Spectroscopy, Fourier Transform Infrared
  • Thermodynamics
  • User-Computer Interface*
  • Water / chemistry*

Substances

  • Ligands
  • Phenols
  • Proteins
  • Water
  • 4-fluorophenol
  • Methanol