Development of reference transcriptomes for the major field insect pests of cowpea: a toolbox for insect pest management approaches in west Africa

PLoS One. 2013 Nov 22;8(11):e79929. doi: 10.1371/journal.pone.0079929. eCollection 2013.

Abstract

Cowpea is a widely cultivated and major nutritional source of protein for many people that live in West Africa. Annual yields and longevity of grain storage is greatly reduced by feeding damage caused by a complex of insect pests that include the pod sucking bugs, Anoplocnemis curvipes Fabricius (Hemiptera: Coreidae) and Clavigralla tomentosicollis Stål (Hemiptera: Coreidae); as well as phloem-feeding cowpea aphids, Aphis craccivora Koch (Hemiptera: Aphididae) and flower thrips, Megalurothrips sjostedti Trybom (Thysanoptera: Thripidae). Efforts to control these pests remain a challenge and there is a need to understand the structure and movement of these pest populations in order to facilitate the development of integrated pest management strategies (IPM). Molecular tools have the potential to help facilitate a better understanding of pest populations. Towards this goal, we used 454 pyrosequencing technology to generate 319,126, 176,262, 320,722 and 227,882 raw reads from A. curvipes, A. craccivora, C. tomentosicollis and M. sjostedti, respectively. The reads were de novo assembled into 11,687, 7,647, 10,652 and 7,348 transcripts for A. curvipes, A. craccivora, C. tomentosicollis and M. sjostedti, respectively. Functional annotation of the resulting transcripts identified genes putatively involved in insecticide resistance, pathogen defense and immunity. Additionally, sequences that matched the primary aphid endosymbiont, Buchnera aphidicola, were identified among A. craccivora transcripts. Furthermore, 742, 97, 607 and 180 single nucleotide polymorphisms (SNPs) were respectively predicted among A. curvipes, A. craccivora, C. tomentosicollis and M. sjostedti transcripts, and will likely be valuable tools for future molecular genetic marker development. These results demonstrate that Roche 454-based transcriptome sequencing could be useful for the development of genomic resources for cowpea pest insects in West Africa.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa, Western
  • Animals
  • Fabaceae / parasitology*
  • Genes, Insect
  • Insecta / genetics
  • Insecta / physiology*
  • Metagenome
  • Pest Control*
  • Polymorphism, Single Nucleotide
  • Transcriptome*

Grants and funding

This project has been made possible through support provided to the Dry Grains Pulses Collaborative Research Support Program (CRSP) by the Bureau for Economic Growth, Agriculture, and Trade, United States Agency for International Development, under the terms of Grant No. EDH-A-00-07-00005. A portion of research data analysis was supported by the United States Department of Agriculture, Agricultural Research Service (USDA-ARS: CRIS Project 3625-22000-017-00). The opinions expressed are those of the authors and do not necessarily reflect the views of the United States Agency for International Development or the United States Government. TAA was supported by the Howard Hughes Medical Institute International Student Research Fellowship. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.