Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberization phenotypes

Plant Cell Environ. 2014 Jun;37(6):1351-63. doi: 10.1111/pce.12238. Epub 2013 Dec 12.

Abstract

Recent advances have defined some of the components of photoperiodic signalling that lead to tuberization in potato including orthologues of FLOWERING LOCUS T (StSP6A) and CYCLING DOF FACTOR (StCDF1). The aim of the current study is to investigate the molecular basis of permissive tuber initiation under long days in Solanum tuberosum Neo-Tuberosum by comparative analysis with an obligate short-day S. tuberosum ssp. Andigena accession. We show that the Neo-Tuberosum accession, but not the Andigena, contains alleles that encode StCDF1 proteins modified in the C-terminal region, likely to evade long day inhibition of StSP6A expression. We also identify an allele of StSP6A from the Neo-Tuberosum accession, absent in the Andigena, which is expressed under long days. Other leaf transcripts and metabolites that show different abundances in tuberizing and non-tuberizing samples were identified adding detail to tuberization-associated processes. Overall, the data presented in this study highlight the subtle interplay between components of the clock-CONSTANS-StSP6A axis which collectively may interact to fine-tune the timing of tuberization.

Keywords: circadian; photoperiod; tuber..

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Genotype
  • Metabolome
  • Molecular Sequence Data
  • Photoperiod*
  • Plant Leaves / genetics
  • Plant Leaves / growth & development
  • Plant Leaves / metabolism
  • Plant Tubers / genetics
  • Plant Tubers / growth & development
  • Plant Tubers / metabolism*
  • Polymorphism, Genetic
  • Sequence Alignment
  • Solanum tuberosum / genetics
  • Solanum tuberosum / growth & development
  • Solanum tuberosum / metabolism*
  • Transcriptome*