Genome of Drosophila suzukii, the spotted wing drosophila

G3 (Bethesda). 2013 Dec 9;3(12):2257-71. doi: 10.1534/g3.113.008185.

Abstract

Drosophila suzukii Matsumura (spotted wing drosophila) has recently become a serious pest of a wide variety of fruit crops in the United States as well as in Europe, leading to substantial yearly crop losses. To enable basic and applied research of this important pest, we sequenced the D. suzukii genome to obtain a high-quality reference sequence. Here, we discuss the basic properties of the genome and transcriptome and describe patterns of genome evolution in D. suzukii and its close relatives. Our analyses and genome annotations are presented in a web portal, SpottedWingFlyBase, to facilitate public access.

Keywords: Drosophila suzukii; SpottedWingFlyBase; genome evolution; ortholog.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Biological Evolution
  • Codon
  • DNA Transposable Elements
  • Drosophila / genetics*
  • Drosophila Proteins / genetics*
  • Female
  • Gene Expression
  • Genome, Insect*
  • Internet
  • Male
  • Molecular Sequence Annotation
  • Phylogeny
  • Transcriptome
  • Web Browser

Substances

  • Codon
  • DNA Transposable Elements
  • Drosophila Proteins