Dongia rigui sp. nov., isolated from freshwater of a large wetland in Korea

Antonie Van Leeuwenhoek. 2013 Dec;104(6):1143-50. doi: 10.1007/s10482-013-0036-9. Epub 2013 Sep 18.

Abstract

A motile, curved to twisted rod-shaped aerobic bacterium, designated strain 04SU4-P(T), was isolated from freshwater collected from the Woopo wetland (Republic of Korea). Cells were observed to be Gram-stain negative, catalase negative and oxidase positive. The major fatty acids (>10 % of the total) were identified as C19:0 ω8c cyclo (24.6 %), C16:0 (24.3 %) and C18:1 ω7c (13.1 %). The DNA G+C content was determined to be 71.5 mol%. The major polar lipids were identified as phosphatidylglycerol, phosphatidylethanolamine, one unknown phospholipid and one unknown aminolipid. The major ubiquinone was determined to be Q-10. A phylogenetic tree based on 16S rRNA gene sequences showed that strain 04SU4-P(T) forms an evolutionary lineage within the genus Dongia and its nearest neighbour is Dongia mobilis LM22(T) (98.0 % sequence similarity). Genomic DNA-DNA hybridization of stain 04SU4-P(T) with D. mobilis LM22(T) showed relatedness of only 34.2 %. The phenotypic characteristics indicate the strain 04SU4-P(T) can be distinguished from the sole member of the genus Dongia. On the basis of the data presented in this study, strain 04SU4-P(T) represents a novel species, for which the name Dongia rigui is proposed. The type strain is 04SU4-P(T) (KCTC 23341(T) = JCM 17521(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Catalase / metabolism
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Fresh Water / microbiology*
  • Korea
  • Locomotion
  • Microscopy, Electron
  • Molecular Sequence Data
  • Oxidoreductases / metabolism
  • Phospholipids / analysis
  • Phylogeny
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Rhodospirillaceae / classification*
  • Rhodospirillaceae / genetics
  • Rhodospirillaceae / isolation & purification*
  • Rhodospirillaceae / physiology
  • Sequence Analysis, DNA
  • Wetlands

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Phospholipids
  • Quinones
  • RNA, Ribosomal, 16S
  • Oxidoreductases
  • Catalase

Associated data

  • GENBANK/HQ436504