Schistosoma mansoni NAD(+) catabolizing enzyme: identification of key residues in catalysis

Biochim Biophys Acta. 2013 Dec;1834(12):2520-7. doi: 10.1016/j.bbapap.2013.09.002. Epub 2013 Sep 12.

Abstract

Schistosoma mansoni NAD(+) catabolizing enzyme (SmNACE), a distant homolog of mammalian CD38, shows significant structural and functional analogy to the members of the CD38/ADP-ribosyl cyclase family. The hallmark of SmNACE is the lack of ADP-ribosyl cyclase activity that might be ascribed to subtle changes in its active site. To better characterize the residues of the active site we determined the kinetic parameters of nine mutants encompassing three acidic residues: (i) the putative catalytic residue Glu202 and (ii) two acidic residues within the 'signature' region (the conserved Glu124 and the downstream Asp133), (iii) Ser169, a strictly conserved polar residue and (iv) two aromatic residues (His103 and Trp165). We established the very important role of Glu202 and of the hydrophobic domains overwhelmingly in the efficiency of the nicotinamide-ribosyl bond cleavage step. We also demonstrated that in sharp contrast with mammalian CD38, the 'signature' Glu124 is as critical as Glu202 for catalysis by the parasite enzyme. The different environments of the two Glu residues in the crystal structure of CD38 and in the homology model of SmNACE could explain such functional discrepancies. Mutagenesis data and 3D structures also indicated the importance of aromatic residues, especially His103, in the stabilization of the reaction intermediate as well as in the selection of its conformation suitable for cyclization to cyclic ADP-ribose. Finally, we showed that inhibition of SmNACE by the natural product cyanidin requires the integrity of Glu202 and Glu124, but not of His103 and Trp165, hence suggesting different recognition modes for substrate and inhibitor.

Keywords: ADP-ribose; ADPR; CD38; Docking; GPI; NAADP(+); NAD(+); Schistosoma mansoni; Schistosoma mansoni NAD(+) catabolizing enzyme; SmNACE; cADPR; cyclic ADP-ribose; glycosyl phosphatidylinositol; nicotinamide adenine dinucleotide; nicotinic acid adenine dinucleotide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADP-ribosyl Cyclase 1 / chemistry
  • ADP-ribosyl Cyclase 1 / genetics
  • Amino Acids
  • Animals
  • Anthocyanins / chemistry
  • Catalytic Domain
  • Helminth Proteins / chemistry*
  • Helminth Proteins / genetics
  • Humans
  • Hydrolases / antagonists & inhibitors
  • Hydrolases / chemistry*
  • Hydrolases / genetics
  • Membrane Glycoproteins / chemistry
  • Membrane Glycoproteins / genetics
  • NAD / antagonists & inhibitors
  • NAD / chemistry
  • NAD / genetics
  • Protein Structure, Tertiary
  • Schistosoma mansoni / enzymology*
  • Schistosoma mansoni / genetics
  • Structural Homology, Protein

Substances

  • Amino Acids
  • Anthocyanins
  • Helminth Proteins
  • Membrane Glycoproteins
  • NAD
  • cyanidin
  • Hydrolases
  • NAD degrading enzyme
  • CD38 protein, human
  • ADP-ribosyl Cyclase 1