Molecular test to assign individuals within the Cacopsylla pruni complex

PLoS One. 2013 Aug 19;8(8):e72454. doi: 10.1371/journal.pone.0072454. eCollection 2013.

Abstract

Crop protection requires the accurate identification of disease vectors, a task that can be made difficult when these vectors encompass cryptic species. Here we developed a rapid molecular diagnostic test to identify individuals of Cacopsyllapruni (Scopoli, 1763) (Hemiptera: Psyllidae), the main vector of the European stone fruit yellows phytoplasma. This psyllid encompasses two highly divergent genetic groups that are morphologically similar and that are characterized by genotyping several microsatellite markers, a costly and time-consuming protocol. With the aim of developing species-specific PCR primers, we sequenced the Internal Transcribed Spacer 2 (ITS2) on a collection of C. pruni samples from France and other European countries. ITS2 sequences showed that the two genetic groups represent two highly divergent clades. This enabled us to develop specific primers for the assignment of individuals to either genetic group in a single PCR, based on ITS2 amplicon size. All previously assigned individuals yielded bands of expected sizes, and the PCR proved efficient on a larger sample of 799 individuals. Because none appeared heterozygous at the ITS2 locus (i.e., none produced two bands), we inferred that the genetic groups of C. pruni, whose distribution is partly sympatric, constitute biological species that have not exchanged genes for an extended period of time. Other psyllid species (Cacopsylla, Psylla, Triozidae and Aphalaridae) failed to yield any amplicon. These primers are therefore unlikely to produce false positives and allow rapid assignment of C. pruni individuals to either cryptic species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Binding Sites
  • DNA Primers / metabolism
  • DNA, Ribosomal Spacer / genetics
  • Genetic Loci
  • Geography
  • Hemiptera / classification*
  • Hemiptera / genetics*
  • Molecular Sequence Data
  • Phylogeny
  • Polymerase Chain Reaction / methods*
  • Species Specificity

Substances

  • DNA Primers
  • DNA, Ribosomal Spacer

Associated data

  • GENBANK/KF305120
  • GENBANK/KF305121
  • GENBANK/KF305122
  • GENBANK/KF305123
  • GENBANK/KF305124
  • GENBANK/KF305125
  • GENBANK/KF305126
  • GENBANK/KF305127
  • GENBANK/KF305128
  • GENBANK/KF305129
  • GENBANK/KF305130
  • GENBANK/KF305131
  • GENBANK/KF305132
  • GENBANK/KF305133
  • GENBANK/KF305134
  • GENBANK/KF305135
  • GENBANK/KF305136
  • GENBANK/KF305137
  • GENBANK/KF305138
  • GENBANK/KF305139
  • GENBANK/KF305140
  • GENBANK/KF305141
  • GENBANK/KF305142
  • GENBANK/KF305143
  • GENBANK/KF305144
  • GENBANK/KF305145
  • GENBANK/KF305146
  • GENBANK/KF305147
  • GENBANK/KF305148
  • GENBANK/KF305149
  • GENBANK/KF305150
  • GENBANK/KF305151
  • GENBANK/KF305152
  • GENBANK/KF305153
  • GENBANK/KF305154
  • GENBANK/KF305155
  • GENBANK/KF305156
  • GENBANK/KF305157
  • GENBANK/KF305158
  • GENBANK/KF305159
  • GENBANK/KF305160
  • GENBANK/KF305161
  • GENBANK/KF305162
  • GENBANK/KF305163
  • GENBANK/KF305164
  • GENBANK/KF305165
  • GENBANK/KF305166
  • GENBANK/KF305167
  • GENBANK/KF305168
  • GENBANK/KF305169
  • GENBANK/KF305170
  • GENBANK/KF305171

Grants and funding

Jean Peccoud was funded by a post-doc grant from the Institut National de la Recherche Agronomique project SDIPS (Speciation & molecular Diagnostic of Insect Pest Species complexes). This project also funded the sequencing. Exchanges of materials between laboratories were made possible thanks to the COST Action FA0807 (Integrated Management of Phytoplasma Epidemics in Different Crop Systems) (http://www.costphytoplasma.eu/), and a bilateral project France-Turkey (PHC BOSPHORE-2010). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.