Measuring transmembrane helix interaction strengths in lipid bilayers using steric trapping

Methods Mol Biol. 2013:1063:37-56. doi: 10.1007/978-1-62703-583-5_3.

Abstract

We have developed a method to measure strong transmembrane (TM) helix interaction affinities in lipid bilayers that are difficult to measure by traditional dilution methods. The method, called steric trapping, couples dissociation of biotinylated TM helices to a competitive binding by monovalent streptavidin (mSA), so that dissociation is driven by the affinity of mSA for biotin and mSA concentration. By adjusting the binding affinity of mSA through mutation, the method can obtain dissociation constants of TM helix dimers (K d,dimer) over a range of six orders of magnitudes. The K d,dimer limit of measurable target interaction is extended 3-4 orders of magnitude lower than possible by dilution methods. Thus, steric trapping opens up new opportunities to study the folding and assembly of α-helical membrane proteins in lipid bilayer environments. Here we provide detailed methods for applying steric trapping to a TM helix dimer.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Biotinylation
  • Cell Membrane / metabolism*
  • Lipid Bilayers / metabolism*
  • Membrane Proteins / chemistry*
  • Membrane Proteins / metabolism*
  • Molecular Sequence Data
  • Protein Binding
  • Protein Interaction Mapping / methods*
  • Protein Refolding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Proteolipids / metabolism
  • Pyrenes / chemistry
  • Streptavidin / chemistry
  • Streptavidin / metabolism
  • Sulfhydryl Compounds / chemistry
  • Thermodynamics

Substances

  • Lipid Bilayers
  • Membrane Proteins
  • Proteolipids
  • Pyrenes
  • Sulfhydryl Compounds
  • proteoliposomes
  • Streptavidin
  • pyrene