Nα-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain

Nat Struct Mol Biol. 2013 Sep;20(9):1116-8. doi: 10.1038/nsmb.2637. Epub 2013 Aug 11.

Abstract

In Saccharomyces cerevisiae, acetylation of the Sir3 N terminus is important for transcriptional silencing. This covalent modification promotes the binding of the Sir3 BAH domain to the nucleosome, but a mechanistic understanding of this phenomenon is lacking. By X-ray crystallography, we show here that the acetylated N terminus of Sir3 does not interact with the nucleosome directly. Instead, it stabilizes a nucleosome-binding loop in the BAH domain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Amino Acid Sequence
  • Crystallography, X-Ray
  • Gene Silencing
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nucleosomes / metabolism*
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Protein Stability
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Silent Information Regulator Proteins, Saccharomyces cerevisiae / chemistry*
  • Silent Information Regulator Proteins, Saccharomyces cerevisiae / genetics
  • Silent Information Regulator Proteins, Saccharomyces cerevisiae / metabolism*
  • Static Electricity

Substances

  • Nucleosomes
  • Recombinant Proteins
  • SIR3 protein, S cerevisiae
  • Silent Information Regulator Proteins, Saccharomyces cerevisiae

Associated data

  • PDB/4KUD
  • PDB/4KUI
  • PDB/4KUL