Has large-scale named-entity network analysis been resting on a flawed assumption?

PLoS One. 2013 Jul 24;8(7):e70299. doi: 10.1371/journal.pone.0070299. Print 2013.

Abstract

The assumption that a name uniquely identifies an entity introduces two types of errors: splitting treats one entity as two or more (because of name variants); lumping treats multiple entities as if they were one (because of shared names). Here we investigate the extent to which splitting and lumping affect commonly-used measures of large-scale named-entity networks within two disambiguated bibliographic datasets: one for co-author names in biomedicine (PubMed, 2003-2007); the other for co-inventor names in U.S. patents (USPTO, 2003-2007). In both cases, we find that splitting has relatively little effect, whereas lumping has a dramatic effect on network measures. For example, in the biomedical co-authorship network, lumping (based on last name and both initials) drives several measures down: the global clustering coefficient by a factor of 4 (from 0.265 to 0.066); degree assortativity by a factor of ∼13 (from 0.763 to 0.06); and average shortest path by a factor of 1.3 (from 5.9 to 4.5). These results can be explained in part by the fact that lumping artificially creates many intransitive relationships and high-degree vertices. This effect of lumping is much less dramatic but persists with measures that give less weight to high-degree vertices, such as the mean local clustering coefficient and log-based degree assortativity. Furthermore, the log-log distribution of collaborator counts follows a much straighter line (power law) with splitting and lumping errors than without, particularly at the low and the high counts. This suggests that part of the power law often observed for collaborator counts in science and technology reflects an artifact: name ambiguity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Names*
  • Publications

Grants and funding

Funding for this study was provided in part by National Science Foundation Social, Behavioral & Economic Sciences (SBE) Science of Science Policy program award 0965341 (http://www.nsf.gov/awardsearch/showAward?AWD_ID=0965341). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.