Synthesis of a single G-quartet platform in water

J Am Chem Soc. 2013 Aug 14;135(32):11985-9. doi: 10.1021/ja405100z. Epub 2013 Aug 1.

Abstract

For over 50 years the G-quartet has been a defining self-assembled structure in biology and non-covalent synthesis. It is shown here for the first time that the G-quartet is isolatable in water in the absence of stabilizing G-quartet stacking or cations through the construction of a phosphate-linked template-assembled synthetic G-quartet. Synthetic design has facilitated preservation of the guanine base, ribose sugar, and phosphate components with correct linkage chemistry relative to G-quadruplex DNA. Thus, a minimal synthetic model of G-quadruplex DNA, as in that associated with human gene promoter or telomere regions, is represented by this system. An application as a probe for interactions between G-quadruplex DNA and potential anticancer therapeutical binding ligands is demonstrated. Binding constants of 10(5)-10(7) M(-1) magnitude and 1:1 stoichiometries for TMPyP4, piper, and azatrux ligands were determined, whereas perturbations in BSU1051 and BRACO19 ligand signal were not observed. These data suggest a unique test for critical end-stacking interactions at the exclusion of intercalative or looping interactions for G-quadruplex binding ligands.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acridines / pharmacology
  • Anthraquinones / pharmacology
  • Antineoplastic Agents / pharmacology*
  • Carbazoles / pharmacology
  • DNA / chemistry*
  • DNA / metabolism
  • G-Quadruplexes / drug effects*
  • Humans
  • Ligands
  • Models, Molecular
  • Perylene / analogs & derivatives
  • Perylene / pharmacology
  • Piperidines / pharmacology
  • Porphyrins / pharmacology
  • Water / chemistry

Substances

  • Acridines
  • Anthraquinones
  • Antineoplastic Agents
  • BSU 1051
  • Carbazoles
  • Ligands
  • N,N'-bis(2-1(piperidino)-ethyl)-3,4,9,10-perylene-tetracarboxylic diimide
  • Piperidines
  • Porphyrins
  • azatrux
  • Water
  • tetra(4-N-methylpyridyl)porphine
  • Perylene
  • DNA
  • BRACO-19