A census of RND superfamily proteins in the Burkholderia genus

Future Microbiol. 2013 Jul;8(7):923-37. doi: 10.2217/fmb.13.50.

Abstract

Aim: The aim of this work was to analyze the eight resistance-nodulation-cell division (RND) families (a group of proteins mainly involved in multidrug resistance of Gram-negative bacteria) in 26 Burkholderia genomes in order to gain knowledge regarding their presence and distribution, to obtain a platform for future experimental tests aimed to identify new molecular targets to be used in antimicrobial therapy against Burkholderia species and to refine the annotation of RND-like sequences in these genomes.

Materials & methods: A total of 417 coding sequences were retrieved and analyzed using different bioinformatics tools.

Results & conclusion: A complex pattern of RND presence and distribution in the different Burkholderia species was disclosed and a core of proteins represented in all 26 genomes was identified. These 'core' proteins might represent useful targets of new synthetic antimicrobial compounds. Furthermore, the annotation of RND-like sequences in Burkholderia was refined.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Anti-Bacterial Agents / pharmacology
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Burkholderia / classification
  • Burkholderia / drug effects
  • Burkholderia / genetics*
  • Burkholderia / metabolism
  • Computational Biology
  • Drug Resistance, Multiple, Bacterial
  • Membrane Transport Proteins / chemistry
  • Membrane Transport Proteins / genetics*
  • Membrane Transport Proteins / metabolism
  • Molecular Sequence Data
  • Multigene Family*
  • Operon
  • Phylogeny
  • Protein Structure, Tertiary
  • Sequence Alignment

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Membrane Transport Proteins