A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing

PLoS One. 2013 Jun 5;8(6):e64194. doi: 10.1371/journal.pone.0064194. Print 2013.

Abstract

A graft-transmissible disease displaying red veins, red blotches and total reddening of leaves in red-berried wine grape (Vitis vinifera L.) cultivars was observed in commercial vineyards. Next-generation sequencing technology was used to identify etiological agent(s) associated with this emerging disease, designated as grapevine redleaf disease (GRD). High quality RNA extracted from leaves of grape cultivars Merlot and Cabernet Franc with and without GRD symptoms was used to prepare cDNA libraries. Assembly of highly informative sequence reads generated from Illumina sequencing of cDNA libraries, followed by bioinformatic analyses of sequence contigs resulted in specific identification of taxonomically disparate viruses and viroids in samples with and without GRD symptoms. A single-stranded DNA virus, tentatively named Grapevine redleaf-associated virus (GRLaV), and Grapevine fanleaf virus were detected only in grapevines showing GRD symptoms. In contrast, Grapevine rupestris stem pitting-associated virus, Hop stunt viroid, Grapevine yellow speckle viroid 1, Citrus exocortis viroid and Citrus exocortis Yucatan viroid were present in both symptomatic and non-symptomatic grapevines. GRLaV was transmitted by the Virginia creeper leafhopper (Erythroneura ziczac Walsh) from grapevine-to-grapevine under greenhouse conditions. Molecular and phylogenetic analyses indicated that GRLaV, almost identical to recently reported Grapevine Cabernet Franc-associated virus from New York and Grapevine red blotch-associated virus from California, represents an evolutionarily distinct lineage in the family Geminiviridae with genome characteristics distinct from other leafhopper-transmitted geminiviruses. GRD significantly reduced fruit yield and affected berry quality parameters demonstrating negative impacts of the disease. Higher quantities of carbohydrates were present in symptomatic leaves suggesting their possible role in the expression of redleaf symptoms.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Crops, Agricultural / virology
  • Evolution, Molecular
  • Fruit / growth & development
  • Fruit / virology
  • Geminiviridae / genetics*
  • Gene Library
  • Genes, Viral
  • Hemiptera / virology*
  • High-Throughput Nucleotide Sequencing
  • Insect Vectors / virology
  • Molecular Typing
  • Phylogeny
  • Plant Diseases / virology*
  • Plant Leaves / growth & development
  • Plant Leaves / virology*
  • Sequence Analysis, DNA
  • Vitis / growth & development
  • Vitis / virology*

Grants and funding

This work was supported, in part, by Washington State University’s Agricultural Research Center in the College of Agricultural, Human, and Natural Resource Sciences, Wine Advisory Committee of the Washington Wine Commission, USDA-Northwest Center for Small Fruits Research, USDA-NIFA Specialty Crop Research Initiative (Award Number 2009-51181-06027), Washington State Department of Agriculture Nursery Assessment Funds, Washington State Commission on Pesticide Registration and USDA-APHIS National Clean Plant Network. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.