PARP inhibitor with selectivity toward ADP-ribosyltransferase ARTD3/PARP3

ACS Chem Biol. 2013 Aug 16;8(8):1698-703. doi: 10.1021/cb4002014. Epub 2013 Jun 25.

Abstract

Inhibiting ADP-ribosyl transferases with PARP-inhibitors is considered a promising strategy for the treatment of many cancers and ischemia, but most of the cellular targets are poorly characterized. Here, we describe an inhibitor of ADP-ribosyltransferase-3/poly(ADP-ribose) polymerase-3 (ARTD3), a regulator of DNA repair and mitotic progression. In vitro profiling against 12 members of the enzyme family suggests selectivity for ARTD3, and crystal structures illustrate the molecular basis for inhibitor selectivity. The compound is active in cells, where it elicits ARTD3-specific effects at submicromolar concentration. Our results show that by targeting the nicotinamide binding site, selective inhibition can be achieved among the closest relatives of the validated clinical target, ADP-ribosyltransferase-1/poly(ADP-ribose) polymerase-1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADP Ribose Transferases / antagonists & inhibitors*
  • ADP Ribose Transferases / chemistry
  • Catalytic Domain
  • Cell Line
  • Crystallography, X-Ray
  • Drug Delivery Systems
  • Drug Stability
  • Enzyme Activation / drug effects
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • GPI-Linked Proteins / antagonists & inhibitors
  • GPI-Linked Proteins / chemistry
  • Humans
  • Inhibitory Concentration 50
  • Models, Molecular
  • Molecular Structure
  • Niacinamide / chemistry
  • Poly(ADP-ribose) Polymerase Inhibitors*
  • Poly(ADP-ribose) Polymerases / chemistry
  • Quinazolinones / chemistry*
  • Quinazolinones / pharmacology

Substances

  • Enzyme Inhibitors
  • GPI-Linked Proteins
  • ME0328
  • Poly(ADP-ribose) Polymerase Inhibitors
  • Quinazolinones
  • Niacinamide
  • ADP Ribose Transferases
  • Poly(ADP-ribose) Polymerases
  • ART3 protein, human

Associated data

  • PDB/4GV0
  • PDB/4GV2
  • PDB/4GV4
  • PDB/4GV7