A detective story in drug discovery: elucidation of a screening artifact reveals polymeric carboxylic acids as potent inhibitors of RNA polymerase

Chemistry. 2013 Jun 24;19(26):8397-400. doi: 10.1002/chem.201301289. Epub 2013 May 16.

Abstract

Chasing the active impurity: In the validation of a screening hit it was discovered that a polymeric trace impurity was responsible for the biological activity. Such a side product can be formed with similar compounds. During the investigations it was discovered that the negatively charged macromolecule interacts very efficiently with the protein surface of E. coli RNAP via electrostatic interactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carboxylic Acids / chemistry*
  • Carboxylic Acids / metabolism
  • Chromatography, High Pressure Liquid
  • DNA / chemistry
  • DNA / metabolism
  • DNA-Directed RNA Polymerases / antagonists & inhibitors*
  • DNA-Directed RNA Polymerases / isolation & purification
  • DNA-Directed RNA Polymerases / metabolism
  • Enzyme Inhibitors / chemistry*
  • Enzyme Inhibitors / metabolism
  • Escherichia coli / enzymology
  • Protein Binding
  • Protein Structure, Tertiary
  • Static Electricity

Substances

  • Carboxylic Acids
  • Enzyme Inhibitors
  • DNA
  • DNA-Directed RNA Polymerases