Expression of a metagenome-derived fumarate reductase from marine microorganisms and its characterization

Folia Microbiol (Praha). 2013 Nov;58(6):663-71. doi: 10.1007/s12223-013-0256-4. Epub 2013 May 11.

Abstract

A potential novel fumarate reductase gene designated frd1A was isolated by screening a marine metagenomic library through a sequence-based strategy. Sequence analyses indicated that Frd1A and other putative fumarate reductases were closely related. The putative fumarate reductase gene was subcloned into a pETBlue-2 vector and expressed in Escherichia coli Tuner(DE3)pLacІ cells. The recombinant protein was purified to homogeneity. Functional characterization by high-performance liquid chromatography demonstrated that the recombinant Frd1A protein could catalyze the hydrogenation of fumarate to succinate acid. The Frd1A protein displayed an optimal activity at pH 7.0 and 28 °C, which could be stimulated by adding metal ions such as Zn(2+) and Mg(2+). The Frd1A enzyme showed a comparable affinity and catalytic efficiency under optimal reaction conditions: k m =0.227 mmol/L, v max= 29.9 U/mg, and k cat/k m=5.44 × 10(4) per mol/s. The identification of Frd1A protein underscores the potential of marine metagenome screening for novel biomolecules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aquatic Organisms
  • Chromatography, High Pressure Liquid
  • Cloning, Molecular
  • Enzyme Activators / metabolism
  • Enzyme Stability
  • Escherichia coli / genetics
  • Fumarates / metabolism
  • Gene Expression
  • Hydrogen-Ion Concentration
  • Kinetics
  • Magnesium / metabolism
  • Metagenome*
  • Molecular Sequence Data
  • Oxidation-Reduction
  • Phylogeny
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Succinate Dehydrogenase / chemistry
  • Succinate Dehydrogenase / genetics*
  • Succinate Dehydrogenase / metabolism*
  • Succinic Acid / metabolism
  • Temperature
  • Zinc / metabolism

Substances

  • Enzyme Activators
  • Fumarates
  • Recombinant Proteins
  • Succinic Acid
  • Succinate Dehydrogenase
  • Magnesium
  • Zinc