Isolation and analysis of α-expansin genes in the tree Anthocephalus chinensis (Rubiaceae)

Genet Mol Res. 2013 Apr 10;12(2):1061-73. doi: 10.4238/2013.April.10.2.

Abstract

Expansins are cell wall-associated proteins that induce wall extension and relax stress by disrupting noncovalent bonds between cellulose microfibrils and cross-linking glycan chains, thereby promoting wall creep. Anthocephalus chinensis is a very fast-growing economically important tree found mainly in South Asia. Sixteen cDNAs, designated AcEXPA1 to AcEXPA16 (GenBank accession Nos. FJ417847, JF922686-JF922700) with corresponding genomic DNA sequences (GenBank accession Nos. GQ228823, JF922701-JF922715), were isolated by amplifying conserved domain binding with genomic walking and RACE techniques from four differential growth tissues in A. chinensis. These α-expansin homologues were highly conserved in size and sequence; they had the same sequence structures as an N-terminal signal peptide, three exons and two introns. Their amino acid alignment showed that A. chinensis expansin genes are divided into three subgroups: A, B and C. This study is the first report on expansin genes from A. chinensis. It will be used for a tissue-specific expression model and for studying the relationship between expansin genes, growth rate and wood quality of the xylem in this fast-growing tree.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • Gene Order
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Pregnancy Proteins / chemistry
  • Pregnancy Proteins / classification
  • Pregnancy Proteins / genetics*
  • Rubiaceae / genetics*
  • Sequence Alignment
  • Trees / genetics*

Substances

  • DNA, Complementary
  • Pregnancy Proteins