Molecular analysis of transcription start sites of separate copies of the suffix short retroelement in genome of Drosophila

Dokl Biochem Biophys. 2013 Mar-Apr:449:112-5. doi: 10.1134/S1607672913020063. Epub 2013 May 9.

Abstract

In order to study TSS in the suffix element, we used total RNA isolated from ovaries of Drosophila melanogaster. Using a 5'-RACE System (Invitrogen) and 454 sequencing, we found the full-length suffix sense transcripts. However, most 5'-RACE reads (>70%) correspond to 5'-truncated transcripts lacking the first 33-39 nucleotides. The data may indicate that these RNAs are products of the RNAi-related silencing mech-anism producing small RNAs that are larger than piRNAs. The full-length suffix transcripts could arise either from the F element or from active separate copies of suffix.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Drosophila melanogaster / genetics*
  • Female
  • Genome, Insect / genetics*
  • Molecular Sequence Data
  • Ovary / metabolism
  • Retroelements / genetics*
  • Transcription Initiation Site*

Substances

  • Retroelements