Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein

PLoS Pathog. 2013;9(4):e1003286. doi: 10.1371/journal.ppat.1003286. Epub 2013 Apr 4.

Abstract

In most organisms, the heat-shock response involves increased heat-shock gene transcription. In Kinetoplastid protists, however, virtually all control of gene expression is post-transcriptional. Correspondingly, Trypanosoma brucei heat-shock protein 70 (HSP70) synthesis after heat shock depends on regulation of HSP70 mRNA turnover. We here show that the T. brucei CCCH zinc finger protein ZC3H11 is a post-transcriptional regulator of trypanosome chaperone mRNAs. ZC3H11 is essential in bloodstream-form trypanosomes and for recovery of insect-form trypanosomes from heat shock. ZC3H11 binds to mRNAs encoding heat-shock protein homologues, with clear specificity for the subset of trypanosome chaperones that is required for protein refolding. In procyclic forms, ZC3H11 was required for stabilisation of target chaperone-encoding mRNAs after heat shock, and the HSP70 mRNA was also decreased upon ZC3H11 depletion in bloodstream forms. Many mRNAs bound to ZC3H11 have a consensus AUU repeat motif in the 3'-untranslated region. ZC3H11 bound preferentially to AUU repeats in vitro, and ZC3H11 regulation of HSP70 mRNA in bloodstream forms depended on its AUU repeat region. Tethering of ZC3H11 to a reporter mRNA increased reporter expression, showing that it is capable of actively stabilizing an mRNA. These results show that expression of trypanosome heat-shock genes is controlled by a specific RNA-protein interaction. They also show that heat-shock-induced chaperone expression in procyclic trypanosome enhances parasite survival at elevated temperatures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line
  • Gene Expression Regulation
  • HSP70 Heat-Shock Proteins* / genetics
  • HSP70 Heat-Shock Proteins* / metabolism
  • Heat-Shock Response / genetics*
  • Humans
  • Protein Binding
  • Protozoan Proteins / genetics
  • Protozoan Proteins / metabolism
  • RNA Interference
  • RNA Processing, Post-Transcriptional
  • RNA Splicing
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA, Protozoan / genetics
  • RNA, Protozoan / metabolism
  • RNA, Small Interfering
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Sequence Alignment
  • Trypanosoma brucei brucei / genetics
  • Trypanosoma brucei brucei / metabolism*
  • Zinc Fingers* / genetics

Substances

  • HSP70 Heat-Shock Proteins
  • Protozoan Proteins
  • RNA, Messenger
  • RNA, Protozoan
  • RNA, Small Interfering
  • RNA-Binding Proteins

Grants and funding

This work was supported mainly by the Deutsche Forschungsgemeinschaft, project B13 of SFB544 (DD). IM and DD are now supported by DFG project Cl112/17-1. AF was supported by the BMBF/Sysmo project “The silicon trypanosome.” The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.