Discovery of Entamoeba histolytica hexokinase 1 inhibitors through homology modeling and virtual screening

J Enzyme Inhib Med Chem. 2014 Jun;29(3):325-32. doi: 10.3109/14756366.2013.779265. Epub 2013 Mar 27.

Abstract

Entamoeba histolytica, the parasite which causes amebiasis is responsible for 110,000 deaths a year. Entamoeba histolytica depends on glycolysis to obtain ATP for cellular work. According to metabolic flux studies, hexokinase exerts the highest flux control of this metabolic pathway; therefore, it is an excellent target in the search of new antiamebic drugs. To this end, a tridimensional model of E. histolytica hexokinase 1 (EhHK1) was constructed and validated by homology modeling. After virtual screening of 14,400 small molecules, the 100 with the best docking scores were selected, purchased and assessed in their inhibitory capacity. The results showed that three molecules (compounds 2921, 11275 and 2755) inhibited EhHK1 with an I50 of 48, 91 and 96 µM, respectively. Thus, we found the first inhibitors of EhHK1 that can be used in the search of new chemotherapeutic agents against amebiasis.

Keywords: Entamoeba histolytica; hexokinase 1; hit discovery; homology modeling; virtual screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiprotozoal Agents / chemistry*
  • Drug Discovery
  • Entamoeba histolytica / chemistry*
  • Entamoeba histolytica / enzymology
  • Enzyme Inhibitors / chemistry*
  • Hexokinase / antagonists & inhibitors*
  • Hexokinase / chemistry
  • High-Throughput Screening Assays
  • Molecular Docking Simulation
  • Protein Conformation
  • Protozoan Proteins / antagonists & inhibitors*
  • Protozoan Proteins / chemistry
  • Small Molecule Libraries / chemistry*
  • Structural Homology, Protein
  • Structure-Activity Relationship
  • User-Computer Interface

Substances

  • Antiprotozoal Agents
  • Enzyme Inhibitors
  • Protozoan Proteins
  • Small Molecule Libraries
  • Hexokinase