Six common algal fatty acids (FAs) with different numbers of double bonds, lipophilic fractions and proteins extracted from the diatom Navicula pelliculosa and algal cells were chlorinated to evaluate their potential in generating disinfection by-products (DBPs). The result showed that the more double bonds in the FAs, the higher the amounts of chloroform and dichloroacetic acid (DCAA) produced, but such a pattern was not observed for trichloroacetic acid (TCAA). Based on the previously reported composition of fatty acids in algal lipids, the DBP generation potentials of algal lipids were calculated. These predicted values were much lower than those measured in the chlorinated algal lipophilic fraction, suggesting unknown lipophilic fraction(s) served as potent DBPs precursors. Another calculation attempted to predict DBP production in algal cells based on algal lipid and protein composition, given quantified measured DBP production per unit algal lipid and proteins. The analysis showed that the observed DBP production was similar to that predicted (< 35% difference), suggesting that algal biochemical compositions may serve as a bioindicator for preliminary estimation of chloroform, DCAA and TCAA formation upon chlorinating algae.