The purpose of this study was to evaluate the effect of natural clinoptilolite (NCLI) and modified clinoptilolite (MCLI) on broiler performance, gut morphology, and its relation to gut circumstances. A total of two hundred forty 1-d-old male chicks were randomly assigned to 3 treatments, each of which comprised 8 pens of 10 chicks per pen. Birds in the control group were fed the basal diet, whereas those in the experimental groups were fed diets supplemented with NCLI at 2% (NCLI group) or MCLI at 2% (MCLI group) for 42 d. The results showed that compared with the control, supplementation with NCLI or MCLI had no significant (P > 0.05) effects on productive parameters from d 1 to 42. Supplementation with MCLI and NCLI was associated with greater (P < 0.05) villus height in the jejunal and ileal mucosa compared with those areas in the controls from d 1 to 42. However, supplementation with NCLI and MCLI had no significant (P > 0.05) influence on the crypt depth in the jejunal and ileal mucosa compared with those in the controls. Total viable counts of Escherichia coli were significantly (P < 0.05) decreased by MCLI and NCLI from d 1 to 21. The NCLI and MCLI significantly increased the total viable counts of Lactobacillus acidophilus from d 22 to 42. Small intestine and cecal pH values in the MCLI group were found to be lower (P < 0.05) than those in other groups. Total volatile fatty acid concentrations were significantly (P < 0.05) decreased in both experimental groups from d 22 to 42. This study showed that NCLI or MCLI, as feed additives for broilers, had a positive effect on gut parameters by acting on microbial populations of the digestive tract.