DHFR 19-bp deletion and SHMT C1420T polymorphisms and metabolite concentrations of the folate pathway in individuals with Down syndrome

Genet Test Mol Biomarkers. 2013 Apr;17(4):274-7. doi: 10.1089/gtmb.2012.0293. Epub 2013 Feb 19.

Abstract

Background: Down syndrome (DS) results from the presence and expression of three copies of the genes located on chromosome 21. Studies have shown that, in addition to overexpression of the Cystathionine β-synthase (CBS) gene, polymorphisms in genes involved in folate/homocysteine (Hcy) metabolism may also influence the concentrations of metabolites of this pathway.

Aim: Investigate the association between Dihydrofolate reductase (DHFR) 19-base pair (bp) deletion and Serine hydroxymethyltransferase (SHMT) C1420T polymorphisms and serum folate and plasma Hcy and methylmalonic acid (MMA) concentrations in 85 individuals with DS.

Methods: Molecular analysis of the DHFR 19-bp deletion and SHMT C1420T polymorphisms was performed by polymerase chain reaction (PCR) by difference in the size of fragments and real-time PCR allelic discrimination, respectively. Serum folate was quantified by chemiluminescence and plasma Hcy and MMA by liquid chromatography-tandem mass spectrometry.

Results: Individuals with DHFR DD/SHMT TT genotypes presented increased folate concentrations (p=0.004) and the DHFR II/SHMT TT genotypes were associated with increased MMA concentrations (p=0.008). In addition, the MMA concentrations were negatively associated with age (p=0.04).

Conclusion: There is an association between DHFR DD/SHMT TT and DHFR II/SHMT TT combined genotypes and folate and MMA concentrations in individuals with DS.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Child
  • Child, Preschool
  • Down Syndrome / blood
  • Down Syndrome / genetics*
  • Female
  • Folic Acid / metabolism*
  • Gene Deletion*
  • Gene Frequency
  • Genotype
  • Glycine Hydroxymethyltransferase / genetics*
  • Homocysteine / blood*
  • Humans
  • Infant
  • Male
  • Methylmalonic Acid / blood*
  • Polymorphism, Genetic*
  • Tetrahydrofolate Dehydrogenase / genetics*
  • Young Adult

Substances

  • Homocysteine
  • Methylmalonic Acid
  • Folic Acid
  • Tetrahydrofolate Dehydrogenase
  • Glycine Hydroxymethyltransferase