A sensitive and specific multiplex PCR approach for sex identification of ursine and tremarctine bears suitable for non-invasive samples

Mol Ecol Resour. 2013 May;13(3):362-8. doi: 10.1111/1755-0998.12072. Epub 2013 Jan 25.

Abstract

We report a new approach for molecular sex identification of extant Ursinae and Tremarctinae bears. Two Y-specific fragments (SMCY and 318.2) and one X-specific fragment (ZFX) are amplified in a multiplex PCR, yielding a double test for male-specific amplification and an internal positive control. The primers were designed and tested to be bear-specific, thereby minimizing the risk of cross-amplification in other species including humans. The high sensitivity and small amplicon sizes (100, 124, 160 base pairs) facilitate analysis of non-invasively obtained DNA material. DNA from tissue and blood as well as from 30 non-invasively collected hair and faeces yielded clear and easily interpretable results. The fragments were detected both by standard gel electrophoresis and automated capillary electrophoresis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • DNA Primers / genetics
  • Electrophoresis, Capillary
  • Feces / chemistry
  • Female
  • Genetic Markers / genetics*
  • Hair / chemistry
  • Kruppel-Like Transcription Factors / genetics*
  • Male
  • Molecular Sequence Data
  • Multiplex Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity
  • Sequence Analysis, DNA
  • Sex Determination Analysis / methods*
  • Species Specificity
  • Ursidae / genetics*
  • Y Chromosome / genetics*

Substances

  • DNA Primers
  • Genetic Markers
  • Kruppel-Like Transcription Factors
  • zinc finger protein, X-linked

Associated data

  • GENBANK/HF547901