Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell leukemia/lymphoma

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2306-11. doi: 10.1073/pnas.1213842110. Epub 2013 Jan 23.

Abstract

Viral tumor models have significantly contributed to our understanding of oncogenic mechanisms. How transforming delta-retroviruses induce malignancy, however, remains poorly understood, especially as viral mRNA/protein are tightly silenced in tumors. Here, using deep sequencing of broad windows of small RNA sizes in the bovine leukemia virus ovine model of leukemia/lymphoma, we provide in vivo evidence of the production of noncanonical RNA polymerase III (Pol III)-transcribed viral microRNAs in leukemic B cells in the complete absence of Pol II 5'-LTR-driven transcriptional activity. Processed from a cluster of five independent self-sufficient transcriptional units located in a proviral region dispensable for in vivo infectivity, bovine leukemia virus microRNAs represent ∼40% of all microRNAs in both experimental and natural malignancy. They are subject to strong purifying selection and associate with Argonautes, consistent with a critical function in silencing of important cellular and/or viral targets. Bovine leukemia virus microRNAs are strongly expressed in preleukemic and malignant cells in which structural and regulatory gene expression is repressed, suggesting a key role in tumor onset and progression. Understanding how Pol III-dependent microRNAs subvert cellular and viral pathways will contribute to deciphering the intricate perturbations that underlie malignant transformation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Argonaute Proteins / metabolism
  • Base Sequence
  • Cattle
  • Cell Line, Tumor
  • Disease Models, Animal
  • Enzootic Bovine Leukosis / genetics*
  • Enzootic Bovine Leukosis / virology*
  • Gene Expression
  • High Mobility Group Proteins / genetics
  • Human T-lymphotropic virus 1 / genetics
  • Humans
  • Leukemia Virus, Bovine / genetics*
  • Leukemia, B-Cell / genetics*
  • Leukemia, B-Cell / veterinary
  • Leukemia, B-Cell / virology*
  • Leukemia-Lymphoma, Adult T-Cell / genetics
  • Leukemia-Lymphoma, Adult T-Cell / virology
  • Lymphoma, B-Cell / genetics*
  • Lymphoma, B-Cell / veterinary
  • Lymphoma, B-Cell / virology*
  • MicroRNAs / chemistry
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA Polymerase III / metabolism
  • RNA, Neoplasm / genetics
  • RNA, Neoplasm / metabolism
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • Sequence Analysis, RNA
  • Sequence Homology, Nucleic Acid
  • Sheep
  • Sheep Diseases / genetics
  • Sheep Diseases / virology
  • Terminal Repeat Sequences

Substances

  • Argonaute Proteins
  • High Mobility Group Proteins
  • MicroRNAs
  • RNA, Neoplasm
  • RNA, Viral
  • RNA Polymerase III

Associated data

  • GEO/GSE42316