The crystal structure of the cysteine protease Xylellain from Xylella fastidiosa reveals an intriguing activation mechanism

FEBS Lett. 2013 Feb 14;587(4):339-44. doi: 10.1016/j.febslet.2013.01.009. Epub 2013 Jan 17.

Abstract

Xylella fastidiosa is responsible for a wide range of economically important plant diseases. We report here the crystal structure and kinetic data of Xylellain, the first cysteine protease characterized from the genome of the pathogenic X. fastidiosa strain 9a5c. Xylellain has a papain-family fold, and part of the N-terminal sequence blocks the enzyme active site, thereby mediating protein activity. One novel feature identified in the structure is the presence of a ribonucleotide bound outside the active site. We show that this ribonucleotide plays an important regulatory role in Xylellain enzyme kinetics, possibly functioning as a physiological mediator.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Bacterial Proteins / agonists
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Catalytic Domain
  • Crystallography, X-Ray
  • Cysteine Proteases / chemistry*
  • Cysteine Proteases / genetics
  • Cysteine Proteases / metabolism
  • Cysteine Proteinase Inhibitors / pharmacology
  • Enzyme Activation
  • Kinetics
  • Models, Molecular*
  • Mutagenesis, Site-Directed
  • Mutant Proteins / agonists
  • Mutant Proteins / antagonists & inhibitors
  • Mutant Proteins / chemistry
  • Mutant Proteins / metabolism
  • Point Mutation
  • Protein Folding
  • Protein Structure, Quaternary
  • Recombinant Proteins / agonists
  • Recombinant Proteins / antagonists & inhibitors
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Uridine Diphosphate / chemistry
  • Uridine Diphosphate / metabolism
  • Xylella / enzymology*

Substances

  • Bacterial Proteins
  • Cysteine Proteinase Inhibitors
  • Mutant Proteins
  • Recombinant Proteins
  • Uridine Diphosphate
  • Cysteine Proteases

Associated data

  • PDB/3OIS